PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26043_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 275aa    MW: 29705.6 Da    PI: 4.8323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26043_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.5e-1021981590
                                -EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                          B3 15 rlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                                rl +p k + +     gg     + ++l+    + W + +++rk++ +  vl++GW++Fv +n+Lk+gD ++ + d + +++
  Cotton_A_26043_BGI-A2_v1.0 21 RLAIPGKILPSLpsfnGGH---AVRIQLMY-GTEIWPIDCTVRKNGYKkPVLSGGWRKFVVDNELKTGDKITMYKDFEdEDG 98
                                4666666666665442222...22333333.4488999998855555559**********************9955333444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-134106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-124106IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-188108No hitNo description
SMARTSM010190.00269110IPR003340B3 DNA binding domain
PfamPF023622.4E-72098IPR003340B3 DNA binding domain
PROSITE profilePS508639.81252110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MASHPTEMFT KELTATDINR RLAIPGKILP SLPSFNGGHA VRIQLMYGTE IWPIDCTVRK  60
NGYKKPVLSG GWRKFVVDNE LKTGDKITMY KDFEDEDGGS HFRVKVEKPP VAKNQDRSHG  120
TLPSSVLAFN DHEVDRTNSG NEADRIPNKA LDDGAIKQEG GIPIMELPDV ATDTLVDGHV  180
IAKPSVTIFG AIMTDEMKSL GITEGTDMGE PSLLSPCMAK PEREIDFLGI AECGDAIAYG  240
SGPSDAAGEA CCNIITHHQS VSLDLVLSQP NPYAG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6163490.0JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.11e-179PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A0D2S4821e-179A0A0D2S482_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2078936